Thursday, October 18, 2018

How to crete R Mark Down files in R studio

need to install:
install.package("rmarkdown")

how to render Rmd file through terminal command line after $ssh username
$ echo "rmarkdown::render('sample.Rmd', clean=TRUE)" | R --slave

$ Rscript -e "rmarkdown::render('sample.Rmd', clean=TRUE)


Need to have "pandoc" package on X11 or Linux machines.
$pandoc -v


Sunday, October 7, 2018

solving ODEs

A nice recalling examples here:

http://mathinsight.org/ordinary_differential_equation_introduction

Thursday, December 14, 2017

data science tools and machine learning

https://turi.com/learn/userguide/

https://www.coursera.org/learn/ml-foundations/home/welcome

Friday, October 13, 2017

https://www.cscu.cornell.edu/news/statnews/stnews11.pdf

Stat Newsletter of Cornell Uni related stats and methods with tools to use.

Thursday, July 20, 2017

aging journals

 Aging Research
http://www.scimagojr.com/journalsearch.php?q=19600166318&tip=sid&clean=0


Experimental Aging Research

http://www.tandfonline.com/action/authorSubmission?journalCode=uear20&page=instructions

Current Aging Science

http://benthamscience.com/journals/current-aging-science/

Monday, July 17, 2017

linux free course and tutorial

https://courses.edx.org/courses/course-v1:LinuxFoundationX+LFS101x+1T2017/info

GeneOntology Pathway Analysis Tools & Resources

Biological Database Network,Gene Conversion:


https://biodbnet-abcc.ncifcrf.gov/db/db2db.php

biological ID translator:


http://bioconductor.org/packages/devel/bioc/vignettes/clusterProfiler/inst/doc/clusterProfiler.html#bitr-biological-id-translator

myGene package in R environment:


reference page
: http://bioconductor.org/packages/release/bioc/html/mygene.html

Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mygene")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("mygene")