1)Copy number variation. CNV is worth to study. : http://www.nature.com/scitable/topicpage/copy-number-variation-445
2)Focus C. elegans for next project as experimental lifespan data sets.
3)Data bases for lifespan :
http://kaeberleinlab.org/projects/lifespan-observations-database
*Observations database
*Sagaweb database
*Managed databases
Showing posts with label RNA-seq. Show all posts
Showing posts with label RNA-seq. Show all posts
Thursday, October 13, 2016
Monday, October 3, 2016
Integrative Genomics Viewer
http://software.broadinstitute.org/software/igv/download
IGV is an excellent way to visualize seq. data , whether it is whole genome seq or ChIP-seq or RNA-seq.
IGV is an excellent way to visualize seq. data , whether it is whole genome seq or ChIP-seq or RNA-seq.
data analysis course sequences on edX
https://courses.edx.org/courses/course-v1:HarvardX+PH525.7x+3T2015/cd8cfac0f386436fa0cb1ed3d0012328/
Friday, September 23, 2016
RNA Sequencing-functional genomics course
Good lecture is on edX
And another one:
https://www.youtube.com/watch?
useful links:
Study information at the Sequence Read Archive
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP033351
Himes et al paper at PubMed Central
https://www.ncbi.nlm.nih.gov/pubmed/24926665
European Nucleotide Archive (EMBL-EBI)
http://www.ebi.ac.uk/ena
Sequence Read Archive (NCBI)
https://www.ncbi.nlm.nih.gov/sra/
A sample table stored in course repo on github
https://github.com/genomicsclass/labs/blob/master/rnaseq/airway_sample_table.csv
(details on creating this table available at the airway package vignette)
http://www.bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html
useful links:
Study information at the Sequence Read Archive
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP033351
Himes et al paper at PubMed Central
https://www.ncbi.nlm.nih.gov/pubmed/24926665
European Nucleotide Archive (EMBL-EBI)
http://www.ebi.ac.uk/ena
Sequence Read Archive (NCBI)
https://www.ncbi.nlm.nih.gov/sra/
A sample table stored in course repo on github
https://github.com/genomicsclass/labs/blob/master/rnaseq/airway_sample_table.csv
(details on creating this table available at the airway package vignette)
http://www.bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html
RNA Sequencing-functional genomics course
Good lecture is on edX
And another one:
https://www.youtube.com/watch?
useful links:
Study information at the Sequence Read Archive
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP033351
Himes et al paper at PubMed Central
https://www.ncbi.nlm.nih.gov/pubmed/24926665
European Nucleotide Archive (EMBL-EBI)
http://www.ebi.ac.uk/ena
Sequence Read Archive (NCBI)
https://www.ncbi.nlm.nih.gov/sra/
A sample table stored in course repo on github
https://github.com/genomicsclass/labs/blob/master/rnaseq/airway_sample_table.csv
(details on creating this table available at the airway package vignette)
http://www.bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html
useful links:
Study information at the Sequence Read Archive
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP033351
Himes et al paper at PubMed Central
https://www.ncbi.nlm.nih.gov/pubmed/24926665
European Nucleotide Archive (EMBL-EBI)
http://www.ebi.ac.uk/ena
Sequence Read Archive (NCBI)
https://www.ncbi.nlm.nih.gov/sra/
A sample table stored in course repo on github
https://github.com/genomicsclass/labs/blob/master/rnaseq/airway_sample_table.csv
(details on creating this table available at the airway package vignette)
http://www.bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html
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