RNA Sequencing-functional genomics course

Good lecture is on edX

https://www.edx.org/course/case-studies-functional-genomics-harvardx-ph525-7x

And another one:

https://www.youtube.com/watch?v=hksQlJLwKqo

useful links:
Study information at the Sequence Read Archive
https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?study=SRP033351

Himes et al paper at PubMed Central
https://www.ncbi.nlm.nih.gov/pubmed/24926665

European Nucleotide Archive (EMBL-EBI)
http://www.ebi.ac.uk/ena

Sequence Read Archive (NCBI)
https://www.ncbi.nlm.nih.gov/sra/

A sample table stored in course repo on github 
https://github.com/genomicsclass/labs/blob/master/rnaseq/airway_sample_table.csv

(details on creating this table available at the airway package vignette)
http://www.bioconductor.org/packages/release/data/experiment/vignettes/airway/inst/doc/airway.html